PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29277.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 98aa    MW: 11217.7 Da    PI: 5.6921
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29277.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.7e-123864127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C+++ rtG C++G++C+F+H+p
  KHN29277.1 38 PGEPDCSYYIRTGLCRFGATCRFNHPP 64
                5799*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763865IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-93964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-64265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSLFERWTFS YDVVSDEMWQ INLRSSETME SGPYPEHPGE PDCSYYIRTG LCRFGATCRF  60
NHPPNRKLAI AAARMKGEFP ERIGQPECQA CTCLSMNA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1465922e-78BT146592.1 Lotus japonicus clone JCVI-FLLj-22F14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015733.19e-48PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ9SWF94e-46ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A444ZRD53e-49A0A444ZRD5_ARAHY; Uncharacterized protein
STRINGPOPTR_0019s08040.12e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2245144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.17e-40zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]