PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29421.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26608.3 Da    PI: 9.4295
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29421.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskR++g+lKKA+ELSvLCdaeva++ifs++gkl++++
  KHN29421.1  9 KRIENKINRQVTFSKRKTGLLKKAKELSVLCDAEVALVIFSPRGKLFTFP 58
                79***********************************************8 PP
2K-box84.81.8e-2873165394
       K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                 k+s+++ + e +++ ++qe++kL++++e  q++qR+l GedL++Ls+keLq Le+qLek+l++ R++K++l++e++eel++ke+ l++   +L
  KHN29421.1  73 KYSNQDgNVELENQGWYQEMSKLNEKYEAVQKTQRRLHGEDLGPLSIKELQILEEQLEKALSQARQRKTQLIIEHVEELRQKERHLEDLRLKL 165
                 5666666778889*************************************************************************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.83E-38278No hitNo description
SuperFamilySSF554553.92E-31279IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-2484164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.22685178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRKTGLLK KAKELSVLCD AEVALVIFSP RGKLFTFPDD  60
AQSIIKTYDR YRKYSNQDGN VELENQGWYQ EMSKLNEKYE AVQKTQRRLH GEDLGPLSIK  120
ELQILEEQLE KALSQARQRK TQLIIEHVEE LRQKERHLED LRLKLEPYGF NLKASLWGST  180
STSAAGDGSF PLLPSQTYPE PFLQIGYSVQ GEPSIVPKTM ASETNFQGWF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-18171172MEF2 CHIMERA
6bz1_B4e-18171172MEF2 CHIMERA
6bz1_C4e-18171172MEF2 CHIMERA
6bz1_D4e-18171172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29421.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028181579.11e-165truncated transcription factor CAULIFLOWER A-like
SwissprotQ8LLR17e-92MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A445J6M01e-166A0A445J6M0_GLYSO; Agamous-like MADS-box protein AGL6
STRINGGLYMA18G45761.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-65AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]