PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29457.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 651aa    MW: 71205.1 Da    PI: 6.3542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29457.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.82.6e-1252856402374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++kfsh+taNq
  KHN29457.1 285 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFVKFSHFTANQ 379
                 579*********************************************************999988885....89999********************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 aI ea+e+eervHiiD+di+qGlQWp L++ LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++l +pfef + va+++ +l++e+L+v++ 
  KHN29457.1 380 AIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLCLPFEFFP-VAEKVGNLDPERLNVSKT 473
                 *************************************************....***************************.7***************** PP

        GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                 Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl +++++eseer++vE++ll+rei+nv+
  KHN29457.1 474 EAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NTGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVL 565
                 ********9..999999999999....*******************97.699*********************************************** PP

        GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 a  g +r+ + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd  L+++SaWr
  KHN29457.1 566 AVGGPSRTGEPK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 640
                 ******998887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.652258620IPR005202Transcription factor GRAS
PfamPF035149.1E-123285640IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MLLPSSLNSS GVAPNYNSTH QHHHFQGLVE SQDQQNSVPA VCGFSGLPLF PSQSQRNRDN  60
IRNSGGNIVD VVASSSPSPS MDDTSGAATT SGWIDGILKD LIHSSNSVSI PQLISNVREI  120
IYPCNPNLAM VLEYRLRLLL TESTTPQHKR GTEGVPLLPS VSSVKLMNNR VVDGIAPNLH  180
FTDASGGAVV VNQHMSNWGV PQITPHHDNT NTNTNTNNNN NPSVSLVTLP SPAPPPHYSP  240
PEEKNPQEED LAAATTTAHE VALSRKKKEE LREQKKKDEE GLHLLTLLLQ CAEAVSAENL  300
EDANKMLLEI SQLSTPFGTS AQRVAAYFSE AISARLVSSC LGIYATLPHT HQSHKVASAF  360
QVFNGISPFV KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LASRPGGAPY  420
VRLTGLGTSM EALEATGKRL SDFANKLCLP FEFFPVAEKV GNLDPERLNV SKTEAVAVHW  480
LQHSLYDVTG SDTNTLWLLQ RLAPKVVTVV EQDLSNTGSF LGRFVEAIHY YSALFDSLGS  540
SYGEESEERH VVEQQLLSRE IRNVLAVGGP SRTGEPKFHN WREKLQQCGF RGISLAGNAA  600
TQASLLLGMF PSEGYTLVED NGILKLGWKD LCLLTASAWR PPFHGAITHH N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02676413380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247950.10.0protein SCARECROW-like
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A445J6U80.0A0A445J6U8_GLYSO; Protein SCARECROW isoform A
STRINGGLYMA09G40620.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]