PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29497.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 300aa    MW: 34249.9 Da    PI: 6.3483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29497.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.5e-25121181259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dDg++WrKYGqKe+ +++fpr+YYrCt++   gC+++k+v+r +e+p ++++tY g+H+++
  KHN29497.1 121 DDGHHWRKYGQKEILNAKFPRNYYRCTHKfdqGCQATKQVQRVQEEPILFKTTYYGHHTCK 181
                 8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-26108182IPR003657WRKY domain
PROSITE profilePS5081120.346115178IPR003657WRKY domain
SuperFamilySSF1182902.35E-24118181IPR003657WRKY domain
SMARTSM007741.4E-36120182IPR003657WRKY domain
PfamPF031061.1E-24121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MENLGGSSRR KAIEELLRGR DSAQQLKSVI NGTYDDGSAT PFAQQLVKEV LMSFTNSLLF  60
LHNNPTSESH HVFNVQVWDS PKSEDSQESN CKSSTIKEPR GCYKRRRTEQ TWEKESEAPI  120
DDGHHWRKYG QKEILNAKFP RNYYRCTHKF DQGCQATKQV QRVQEEPILF KTTYYGHHTC  180
KNLANPDIIL DPMSPSSSSK FLSFDNSFST PSKQECPFLS SSNNFPSSSS VKRECKEEVP  240
PSISSNDYLI SSDLTFDSSP RHHVTLSSTL DSEYKSVDIS DVLYDSAQLD FVFEPFLEIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21120181869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312360.0KT031236.1 Glycine max clone HN_CCL_113 WRKY transcription factor (Glyma09g41050.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247996.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A445J7960.0A0A445J796_GLYSO; Putative WRKY transcription factor 70 isoform A
STRINGGLYMA09G41050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-39WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]