PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29532.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 152aa    MW: 16760.1 Da    PI: 4.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29532.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000117441154
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +RR+ + + +++Lr++  +      + l+Ka+i   A +YI +L
  KHN29532.1  7 KRRASLEETLQQLRDVTNS------TALNKASIIVDASKYIEEL 44
                6899999999999998665......46**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-7757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-7759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.55183152IPR002912ACT domain
CDDcd048733.36E-492148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAASREKRRA SLEETLQQLR DVTNSTALNK ASIIVDASKY IEELKQKVEG LNSELEIAES  60
STTTQIDELP MVIVKTLKKG FLINVLLEKN CPGMLVSILE AFEELGLDVL DARVSCEDSF  120
QLEAVGRESH KNDSVDAQVV KQAVLQAIKN AD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29532.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923090.0BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236453.11e-105uncharacterized protein LOC100527466
RefseqXP_028180263.11e-105uncharacterized protein LOC114367306
TrEMBLA0A445J7601e-104A0A445J760_GLYSO; Uncharacterized protein
TrEMBLC6T4E81e-104C6T4E8_SOYBN; Uncharacterized protein
STRINGGLYMA09G41470.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-06bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]