PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29626.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 257aa    MW: 29118.3 Da    PI: 8.9205
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29626.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.7e-2785144158
                 ---SS-EEEEEEE--.TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
        WRKY   1 ldDgynWrKYGqKev.kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                 ++Dgy+W+KYGqK+v k+++ pr+Y++C+ a +Cpvkk+v+rs +d+++++ tYeg+Hnh
  KHN29626.1  85 VKDGYQWKKYGQKKVtKDNPSPRAYFKCSLApSCPVKKRVQRSIQDKSILVATYEGKHNH 144
                 58**********998689***********999**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-2679145IPR003657WRKY domain
PROSITE profilePS5081122.79180147IPR003657WRKY domain
SuperFamilySSF1182903.14E-2282146IPR003657WRKY domain
SMARTSM007745.5E-2885146IPR003657WRKY domain
PfamPF031061.9E-2286144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
VETLEAKLQR VKEDNRTLRV MLETLSSKCE KLQSHLQEIN NEEQQVGTKS DQSGSVLLAR  60
PEFSMAQKPS QIFFKTHPKD NSLMVKDGYQ WKKYGQKKVT KDNPSPRAYF KCSLAPSCPV  120
KKRVQRSIQD KSILVATYEG KHNHGVFHDL LKPSSSIPET SIMINNLPMT NMPNDKDTVN  180
IDLALCNWDQ TDIRLCDDVK QQNDRGSKSK IEGYVSPLVK DPDFIMPLAE AVVHSLKSQT  240
YKQVGLNLNL GLPEPHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19841441371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227000.10.0probable WRKY transcription factor 40
TrEMBLA0A445KWB80.0A0A445KWB8_GLYSO; Putative WRKY transcription factor 40
STRINGGLYMA06G23990.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-38WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]