PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN29694.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 161aa MW: 18872.5 Da PI: 5.1168

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN29694.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	2.9e-31	100	158	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ gC+vkk+ver+++dp++v++tYeg Hnh+ KHN29694.1 100 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVDGCQVKKRVERDKDDPRYVITTYEGIHNHQ 158 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.3E-33	87	158	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-28	93	158	IPR003657	WRKY domain
PROSITE profile	PS50811	29.884	95	157	IPR003657	WRKY domain
SMART	SM00774	8.9E-36	100	159	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	101	158	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MTDKNPRPPD SPDDDFTNQW PLELSEYLNF DDDQWPDDYP ESFVSGHVFS HNNQANEVGN 60 FGGSSTHFEE SSSRDVGNER EKKEVRDRVA FKTKSEVEIL DDGFKWRKYG KKMVKNSPNP 120 RNYYRCSVDG CQVKKRVERD KDDPRYVITT YEGIHNHQNC I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	90	157	7	74	Probable WRKY transcription factor 4
2lex_A	4e-26	90	157	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN29694.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	4e-47	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028227831.1	1e-118	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	3e-45	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A445KWF1	1e-116	A0A445KWF1_GLYSO; Putative WRKY transcription factor 50
STRING	GLYMA04G05700.1	1e-115	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-47	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]