PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29722.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 201aa    MW: 22465.5 Da    PI: 9.599
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29722.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-196497134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  KHN29722.1 64 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAR 97
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.9935894IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-1958109IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-135899No hitNo description
Gene3DG3DSA:3.30.50.108.8E-166297IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.43E-1363100No hitNo description
PfamPF003202.7E-176497IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406489IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
DSSSECGHHN VSLYKIEDEE NKRDHDYEKW MSSTARLTRK MMRLPSTSSD LATKKALNNI  60
TRVCADCNTT STPLWRSGPN GPKSLCNACG IRQRKARRAM AEAVNGFAPS VNSSSTKIRV  120
HHKEKKSRTN HFARFRLKCK LATTSTAEGT SQQENVKIDL NDFGLSLRDS SALKQQVFPI  180
MDEVAQAAML LMDLSCGFVY C
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29722.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578078.11e-149putative GATA transcription factor 22
RefseqXP_028226996.11e-149putative GATA transcription factor 22
TrEMBLA0A445KVV21e-148A0A445KVV2_GLYSO; Putative GATA transcription factor 22
TrEMBLK7KI741e-148K7KI74_SOYBN; Uncharacterized protein
STRINGGLYMA04G05431.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-24cytokinin-responsive gata factor 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]