PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29762.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 172aa    MW: 19467.8 Da    PI: 7.1456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29762.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-192776255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr+   +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  KHN29762.1 27 EYRGVRQQT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 76
                69****988.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.80E-322686No hitNo description
SMARTSM003801.5E-372790IPR001471AP2/ERF domain
PfamPF008473.6E-132776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-302785IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-212785IPR016177DNA-binding domain
PROSITE profilePS5103222.3392784IPR001471AP2/ERF domain
PRINTSPR003673.9E-102839IPR001471AP2/ERF domain
PRINTSPR003673.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKVQPLTSVH QKGPTRGKGG PQNACCEYRG VRQQTWGKWV AEIREPKKRT RLWLGSFATA  60
EEAAMAYDEA ARRLYGPDAY LNLPHLQPSV HLIHQRLQEL KRNSVVSQSS SSSSNDPKAE  120
IQNVDSKNHG EDENPPKDVQ TSSEEVLGDL QEKPQIDLHE FLQQMGILKE ER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172884663ATERF1
3gcc_A1e-172884663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29762.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350461e-127AC235046.1 Glycine max strain Williams 82 clone GM_WBb0017A04, complete sequence.
GenBankAC2354521e-127AC235452.1 Glycine max strain Williams 82 clone GM_WBb0166E13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553420.12e-99dehydration-responsive element-binding protein 2F
RefseqXP_028217981.12e-99dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX53e-55DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0B2RD311e-125A0A0B2RD31_GLYSO; Dehydration-responsive element-binding protein 2F
STRINGGLYMA19G32380.16e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]