PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30002.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 494aa    MW: 55431.4 Da    PI: 8.8543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30002.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036437459123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C+k F++   L  H r+H
  KHN30002.1 437 HECPICNKIFRSGQALGGHKRSH 459
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-4529IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.14729IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-6730IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473104131IPR007087Zinc finger, C2H2
SMARTSM003550.21104126IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.07E-8105126No hitNo description
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
PfamPF139125.2E-7106128IPR007087Zinc finger, C2H2
SuperFamilySSF576673.07E-8432459No hitNo description
PfamPF139122.2E-11436459IPR007087Zinc finger, C2H2
SMARTSM003550.018437459IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702437459IPR007087Zinc finger, C2H2
PROSITE patternPS000280439459IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEETRKFVCK YCSKRFPCGK SLGGHIRTHM MSSEHHHSAL ANNEERNNNN NNAANAMFKF  60
DGGRKKKRDL GSEENGNNNN YGLRENPKKT TRFVHSNATL QLDKFCKECG KGFPSLKALC  120
GHMACHSEKD KGGFATEKQK LVMDSQSDTE TSSAPRRSKR MKSKTLSSSN NNNNNQPQSS  180
SVSEVEQEQE ELARCLMMLS KDSSYKGRFA LLTESSDNNS VVITKSPSLE TKVTTMMNVY  240
GKNSMERKLE LEQHKDLKFK SVEVGYDSDN SDSGYFRYGP KSDESNDEFF RNEVKSSKVG  300
YLNGFDQEYD VVESRKVLSR GRSRSSEFKK FVLEDWESYD REDGDVAARK FGSKKFKKSN  360
YDDDSLGQNL GGVSTRKYEC LTSERYNGCS DDSAYESDEN STDTDSYPAP KAHHSNRNNL  420
SGNKGKKKLK SKKSKAHECP ICNKIFRSGQ ALGGHKRSHF IGGSEENTLV IRPSAPPAAV  480
PCLIDLNLPA PVDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520110.20.0putative uncharacterized protein DDB_G0287457
RefseqXP_028203157.10.0putative uncharacterized protein DDB_G0287457
TrEMBLA0A445LMJ70.0A0A445LMJ7_GLYSO; Uncharacterized protein
TrEMBLK7K7S50.0K7K7S5_SOYBN; Uncharacterized protein
STRINGGLYMA02G12840.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-73C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]