PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30062.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 354aa    MW: 40102.4 Da    PI: 6.5838
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30062.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
       KHN30062.1 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding49.97.4e-1667109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++T++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
       KHN30062.1  67 RGSFTPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.315961IPR017930Myb domain
SuperFamilySSF466898.99E-3011108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001675.08E-121761No hitNo description
PROSITE profilePS5129425.65262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2565116IPR009057Homeodomain-like
SMARTSM007177.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1467110IPR001005SANT/Myb domain
CDDcd001671.35E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF TPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLLSHD  120
VVPSLATFSD HIHGPPNGSM ESFFPLTDNP ILNSHHHLDQ LFLPIIPSPI LQAFDHHHHN  180
NDIKIDINKF FNNNANFLQY FQNPMPETVP PISNTTIPSL YEEDAWSSLG CVPIHLNPNQ  240
ENQIMITKSD HTTPHLIVEK FINPSTWQQQ QQHSVEVEPP ILPKVCESIE DYVCSIPYSS  300
SVNSQDQHVE AVACFTPVIC PQDQVEYIDA LIMSSLPSST TTSSSVVSFF QADK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188882.10.0transcription factor MYB26-like
TrEMBLA0A445IF460.0A0A445IF46_GLYSO; Transcription factor MYB26
STRINGGLYMA13G42431.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-81myb domain protein 26
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]