PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN30083.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 1009aa MW: 110857 Da PI: 5.9788

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN30083.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.7e-29	638	688	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ KHN30083.1 638 EKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGIPRWPSRKINKV 688 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	622	708	IPR003035	RWP-RK domain
Pfam	PF02042	5.4E-26	640	688	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.39E-21	905	994	No hit	No description
SMART	SM00666	1.2E-18	909	991	IPR000270	PB1 domain
PROSITE profile	PS51745	18.198	909	991	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.6E-22	910	991	No hit	No description
Pfam	PF00564	3.2E-14	912	990	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence Send to blast
MEYPFSPKDR VIGDWQSSGA QLEGSASLDG RMSNSISEDM PNSFSELMNF DTYAGLCYSP 60 SITDQILANE LPSFAPLSYP LPDGFNPVQL NSGQCCMSGV GRNNNDTENS SLYGEKVVCQ 120 QMDTLLGFLN DTNEANNLNS KLKINVSSQH LNNSDTGNYM MSRPPGLSLD ERMLRALSFF 180 KESAGGGILA QVWVPIKDGD QFILSTSEQP YLLDQMLAGY REVSRTFTFS AEGKSGCSLG 240 LPGRVFTSKV PEWTSNVGYY SMSEYLRFEH AINHKVCGSI AFPIFDLHSE LPCCAVLELV 300 TTNEKPDFDR ELEIVCRALQ ACFYFSSVTS LSALFACLTT SHVESDVEGS NDKCIYHGFL 360 QLVNLRTAKP LRCLPQCLSN NKKATLTEIV DVLRSVCHAH RLPLGLTWIP CCFTECSRGE 420 ASSIRIEGGH STSRGKNILC LEESACYITD RAMGGFVRAC MEHRLEEGKG IAGKALQSNH 480 PFFYPDVKTY DISEYPLVHH ARKYNLNAAV AIRLRSTYTN DDDYILEFFL PVNMKGSSEQ 540 QLLLDNLSGT MQRICSSLRT VSETELSGME SLAVGLGKKN APSFFPLSSR NSAIPLINGD 600 CDSVQKATNL RDNEIESSPN QERNGSKRQV QKNRSTSEKN VSLSVLQQYF SGSLKDAAKN 660 IGVCPTTLKR ICRQHGIPRW PSRKINKVNR SLKKIQTVLD SVQGVEGGLK FDPSMGAFVA 720 GGSIIQEIDA HKSTIKDPVP VAQDAFSVRP APCSEGENFS IKLEGKLKKT NVSSVNYSED 780 SKSMAINDGS CQTASLCTKV QDCPEQACLG SVLAKEHDKR ILNKGGLSVE KFKRNIVGQS 840 SKTLIGDEMD IGVDGDDGVV ERNHPTSSSL IDSSNGSGSM MHSSSSGSQS FKNQDQSKVK 900 STIVDSRSKL IVKATYREDT IRFTFDPCAG CFSLYEEVAA RFKLQNGLFQ LKYLDDEEEW 960 VMLVNNADLQ ECIEILDDIG TRSVRFLVRD MPSVLGSSGS SNSYLGGSS

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence Send to blast

MEYPFSPKDR VIGDWQSSGA QLEGSASLDG RMSNSISEDM PNSFSELMNF DTYAGLCYSP  60
SITDQILANE LPSFAPLSYP LPDGFNPVQL NSGQCCMSGV GRNNNDTENS SLYGEKVVCQ  120
QMDTLLGFLN DTNEANNLNS KLKINVSSQH LNNSDTGNYM MSRPPGLSLD ERMLRALSFF  180
KESAGGGILA QVWVPIKDGD QFILSTSEQP YLLDQMLAGY REVSRTFTFS AEGKSGCSLG  240
LPGRVFTSKV PEWTSNVGYY SMSEYLRFEH AINHKVCGSI AFPIFDLHSE LPCCAVLELV  300
TTNEKPDFDR ELEIVCRALQ ACFYFSSVTS LSALFACLTT SHVESDVEGS NDKCIYHGFL  360
QLVNLRTAKP LRCLPQCLSN NKKATLTEIV DVLRSVCHAH RLPLGLTWIP CCFTECSRGE  420
ASSIRIEGGH STSRGKNILC LEESACYITD RAMGGFVRAC MEHRLEEGKG IAGKALQSNH  480
PFFYPDVKTY DISEYPLVHH ARKYNLNAAV AIRLRSTYTN DDDYILEFFL PVNMKGSSEQ  540
QLLLDNLSGT MQRICSSLRT VSETELSGME SLAVGLGKKN APSFFPLSSR NSAIPLINGD  600
CDSVQKATNL RDNEIESSPN QERNGSKRQV QKNRSTSEKN VSLSVLQQYF SGSLKDAAKN  660
IGVCPTTLKR ICRQHGIPRW PSRKINKVNR SLKKIQTVLD SVQGVEGGLK FDPSMGAFVA  720
GGSIIQEIDA HKSTIKDPVP VAQDAFSVRP APCSEGENFS IKLEGKLKKT NVSSVNYSED  780
SKSMAINDGS CQTASLCTKV QDCPEQACLG SVLAKEHDKR ILNKGGLSVE KFKRNIVGQS  840
SKTLIGDEMD IGVDGDDGVV ERNHPTSSSL IDSSNGSGSM MHSSSSGSQS FKNQDQSKVK  900
STIVDSRSKL IVKATYREDT IRFTFDPCAG CFSLYEEVAA RFKLQNGLFQ LKYLDDEEEW  960
VMLVNNADLQ ECIEILDDIG TRSVRFLVRD MPSVLGSSGS SNSYLGGSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN30083.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU028318	0.0	EU028318.1 Glycine max clone BAC gmw1-45b2 genomic sequence.
GenBank	EU028319	0.0	EU028319.1 Glycine max clone BAC gmw1-91g6 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028189466.1	0.0	protein NLP8-like
Refseq	XP_028189467.1	0.0	protein NLP8-like
Refseq	XP_028189468.1	0.0	protein NLP8-like
Refseq	XP_028189469.1	0.0	protein NLP8-like
Refseq	XP_028189470.1	0.0	protein NLP8-like
TrEMBL	A0A445IEF9	0.0	A0A445IEF9_GLYSO; Protein NLP8 isoform A
STRING	GLYMA13G42160.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]