PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30100.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 256aa    MW: 29620.4 Da    PI: 6.4306
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30100.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1821e-2579169190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++  ++ + r   + + tr gC+a++++ +++ gkw+vtk+++eH+H+l+
  KHN30100.1  79 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHR-RDRVlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHKLM 169
                 6******************************************98882.2222458899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2279169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDHQSGQGFN SDDSDLDMQA EISEKPKKVD EFSKNLELCG SEDEMFVEIE QPLANISTDI  60
EAVEPFIGME FNSREEAREF YIAYGRRIGF TVRIHHNRRS RVNNQVIGQD FVCSKEGFRA  120
KKYVHRRDRV LPPPPATREG CQAMIRLALR DGGKWVVTKF VKEHTHKLMS PSKVPWRGSG  180
KHLVSEDEKD KRIRELSLEL YNERQKCKRR CAAYEEQLNM ILNDLEKHTE HISEKVAAVV  240
RSIREIEEEI SDSDGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191875.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028191876.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445IE870.0A0A445IE87_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A
STRINGGLYMA13G41920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.15e-40FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]