PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30162.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 719aa    MW: 80001.2 Da    PI: 8.6346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30162.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07619668147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       KHN30162.1 619 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 668
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.14E-7419508IPR029071Ubiquitin-related domain
PROSITE profilePS500538.502424494IPR000626Ubiquitin domain
PROSITE profilePS5129415.654614673IPR017930Myb domain
SMARTSM007173.5E-7618671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10619669IPR009057Homeodomain-like
CDDcd116601.54E-16620670No hitNo description
SuperFamilySSF466892.33E-15620701IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MVLQKRLDYS FYGYQVPTKR RATRLAKRRV TFQRRLEDNQ MCAFDLLATV ADNLLQEKQN  60
PTTSSDRSSE KDGDGFPKEE RQDANKPFKT ELSDEASCDR KCQLEFVKEG SSNANKPFKV  120
ELSDEGISDR KCFSNISSQV YNQNCCSKEL PEHEIDGHLC IASIVTSSSC SEKIVAETLV  180
DGKGHNGMEK LASKVELGSC GYLESRGCKL DGDVSKVKDD KFGKVPIDTG TGLCCFEDTL  240
DEKPLALISS CGNAKMSGYD DSMPQSSWSK GCDNVLVDSR DDDENFSGCA HPSTKIKSFR  300
PITCIDDRKT KKRLASKHHK VSQESKHDIL SNSVLDGNLK SVYSSRKNYY KSQRSQMNIP  360
FKKRKLFNCS SDTNSNGYIR SDDTCYSPKN DTNQSVSCSS SGMSQDHGTS SLGHSALRSR  420
DSYVKLRIKS FRVPELFIEI PETATVGSLK RTVMEAVTAV LGGGLRVGVI LHGKKVRDDS  480
KTLLQTGISH DNHLDALGFA LEPNCSRNRP SACATTDSLH IPSADMPQPL IGYPSSPAVI  540
HQRIQGFSNM LAKHQATSSG NLVESDHDSA PSPINTSGEK YLSDSKELIT VPEMGMEALA  600
VLPVHQKSKR TEIAQRRIRR PFSVTEVEAL VQAVEKLGTG RWRDVKLRAF DNAKHRTYVD  660
LKDKWKTLVH TARISAQQRR GEPVPQELLD RVLTAHAYWS QQQTKQQLKH HSTKPCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-576037091107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941300.0BT094130.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187635.10.0telomere repeat-binding protein 1-like isoform X1
SwissprotQ6R0E31e-128TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A445IDU70.0A0A445IDU7_GLYSO; Telomere repeat-binding protein 5 isoform A
STRINGGLYMA13G41210.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]