PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30196.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 160aa    MW: 17962.8 Da    PI: 9.1849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30196.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000432951123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C+++Fs+   L  H  +H
  KHN30196.1 29 FKCKTCNRRFSSFQALGGHRASH 51
                89**********99999998887 PP
2zf-C2H210.80.001679101123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+Cg  F     L  H+r+H
  KHN30196.1  79 HPCPICGLEFAIGQALGGHMRKH 101
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-729101No hitNo description
PROSITE profilePS5015710.3672956IPR007087Zinc finger, C2H2
SMARTSM003550.0862951IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-122953IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SMARTSM003550.2979101IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-879103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MANCLMLLTK VGESETNYPI SKGRDDGDFK CKTCNRRFSS FQALGGHRAS HKKPKLMVTD  60
LSWHHELPNN PTMKQPRMHP CPICGLEFAI GQALGGHMRK HRSAINDGLL CGKPSSLSIL  120
KNSSKDAHER LNLRLDLNLT PMEEDDLKLN LRTPVLNCFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4173300.0FJ417330.1 Glycine soja putative Cys2-His2 type zinc finger protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543503.11e-116zinc finger protein ZAT12
RefseqXP_028188792.11e-116zinc finger protein ZAT12-like
TrEMBLA0A445IDV81e-115A0A445IDV8_GLYSO; Zinc finger protein ZAT11
TrEMBLB7TYQ11e-114B7TYQ1_GLYSO; Putative Cys2-His2 type zinc finger protein
TrEMBLK7M3C61e-115K7M3C6_SOYBN; Uncharacterized protein
STRINGGLYMA13G40860.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-36C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]