PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30252.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17916.7 Da    PI: 9.9822
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30252.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-21350249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +  n+sn  vtfskRr+g++KKA+EL +LCd++v vi+fs+ ++++ +
  KHN30252.1  3 KMRNESNLRVTFSKRRTGVFKKASELATLCDVDVTVIMFSPGNRVFSF 50
                5689****************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.586154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-23178IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-22153IPR002100Transcription factor, MADS-box
PfamPF003199.7E-23450IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-101631IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-103152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKKMRNESNL RVTFSKRRTG VFKKASELAT LCDVDVTVIM FSPGNRVFSF GSPSVDSVVQ  60
CYKTHVPPPL LTLDLNKVHS TVDEVELHTH LHCLSNQIAI EKKRTKDLNH LAKAAEDQFW  120
WARPIESMTD SQLDKYKKML EEFKRQLKEK RGNLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358430.0AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588890.11e-112agamous-like MADS-box protein AGL62
RefseqXP_028184653.11e-112agamous-like MADS-box protein AGL62
TrEMBLA0A0B2REI51e-112A0A0B2REI5_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G10920.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13864521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-34AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]