PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30258.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 220aa    MW: 25154.1 Da    PI: 6.6324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30258.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18131181255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+     +r++lg+f+++ +Aaka++ a+ k++g
  KHN30258.1 131 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 181
                 8********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-30130189No hitNo description
SMARTSM003801.7E-36131195IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22131190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-31131190IPR001471AP2/ERF domain
PROSITE profilePS5103224.316131189IPR001471AP2/ERF domain
PfamPF008473.8E-13131181IPR001471AP2/ERF domain
PRINTSPR003674.2E-13132143IPR001471AP2/ERF domain
PRINTSPR003674.2E-13171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTTAEKTSNL DLIRQHLFGE NIISDSSSFV SNLHHHPVKL EPPSSPEFDF TSYILDNNTS  60
SNFFTFLEGY DLVADMKFVI DSDNTTTMVI PSKEVIKKCN INSPEEQPMV SSSSEEKPTM  120
KKSEHYDEAK RYRGVRRRPW GKFAAEIRDP TRKGTRVWLG TFDSEIDAAK AYDCAAFKMR  180
GQKAILNFPL EAGESDPKPN NSCGRKRRRD QNHDHEFELP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-28130190161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-28128196270ATERF1
3gcc_A5e-28128196270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204208RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30258.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914360.0BT091436.1 Soybean clone JCVI-FLGm-8A1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235286.21e-166DNA-binding domain-containing protein
RefseqXP_028183011.11e-166ethylene-responsive transcription factor ERF107-like
TrEMBLA0A0B2REH81e-164A0A0B2REH8_GLYSO; Ethylene-responsive transcription factor ERF106
TrEMBLI1LAE71e-164I1LAE7_SOYBN; Uncharacterized protein
STRINGGLYMA10G23460.11e-165(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-42ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]