PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30312.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 27990 Da    PI: 10.1933
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30312.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ +qvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  KHN30312.1  9 KRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIMFSTKGKLFEYSS 59
                79***********************************************96 PP
2K-box904.5e-3082170997
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 ++++ + +++ e+ kL +++e L r+ R++lG+dL++LslkeLq+LeqqL+++lk+iR++Kn+++ e+i++l k+ + lqe+n +L k+
  KHN30312.1  82 NNNESQGNWSFEYIKLTAKVEVLDRNVRNFLGNDLDPLSLKELQSLEQQLDTALKRIRTRKNQVMNESISDLHKRARTLQEQNSKLAKM 170
                 55666889******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31284IPR002100Transcription factor, MADS-box
CDDcd002655.04E-39275No hitNo description
PRINTSPR004043.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-2784170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.97887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FSKRRSGLLK KANEISVLCD AQVALIMFST KGKLFEYSSE  60
RSMEDVLERY ERYTHTALTG ANNNESQGNW SFEYIKLTAK VEVLDRNVRN FLGNDLDPLS  120
LKELQSLEQQ LDTALKRIRT RKNQVMNESI SDLHKRARTL QEQNSKLAKM KEKAKTVTEG  180
PHTGPETLGP NSSTLNLTSP QLPPPPQRLV PSLTLCETFQ GRALVEETGK AQTVPSGNSL  240
IPPWMLHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19173172MEF2C
5f28_B3e-19173172MEF2C
5f28_C3e-19173172MEF2C
5f28_D3e-19173172MEF2C
6byy_A3e-19174173MEF2 CHIMERA
6byy_B3e-19174173MEF2 CHIMERA
6byy_C3e-19174173MEF2 CHIMERA
6byy_D3e-19174173MEF2 CHIMERA
6bz1_A2e-19174173MEF2 CHIMERA
6bz1_B2e-19174173MEF2 CHIMERA
6bz1_C2e-19174173MEF2 CHIMERA
6bz1_D2e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985710.0BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584554.10.0uncharacterized protein LOC100786580 isoform X1
RefseqXP_006584555.10.0uncharacterized protein LOC100786580 isoform X1
RefseqXP_028245052.10.0truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_028245053.10.0truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotD7SMN63e-89FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0B2REN50.0A0A0B2REN5_GLYSO; Agamous-like MADS-box protein AGL8
TrEMBLI1KWI80.0I1KWI8_SOYBN; Uncharacterized protein
STRINGGLYMA08G27680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-67AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]