PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN30346.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 242aa MW: 27120.4 Da PI: 8.5232

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN30346.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	67	113	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +k+L KHN30346.1 67 KNHKEAEKRRRERINSHLDQLRTLLPCN-----SKTDKASLLAKVVQRVKEL 113 58***********************8.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-14	61	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-11	67	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.87E-12	67	116	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-14	68	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-12	70	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.8E-4	157	218	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDNSHLLQFL PNTTTSTNNT PFFHHAPPHT HSTFSTNSSN NTSSYPFHLS QITETPSHHD 60 RALAAMKNHK EAEKRRRERI NSHLDQLRTL LPCNSKTDKA SLLAKVVQRV KELKQQTSEI 120 TELETVPSET DEITVLATTG GDYASGGDDG RLIFKASLCC EDRSDLIPDL IEILNSLHLK 180 TLKAEMATLG GRTRNVLIVA ADKEHSIESI HFLQNSLKSL LDRSSSGDRS KRRRGLDRRL 240 MS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN30346.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520487.1	1e-178	transcription factor bHLH106
Refseq	XP_028225181.1	1e-178	transcription factor bHLH106-like
Swissprot	O80674	1e-75	BH106_ARATH; Transcription factor bHLH106
TrEMBL	A0A0B2R7D9	1e-176	A0A0B2R7D9_GLYSO; Transcription factor bHLH106
TrEMBL	A0A0R0KI95	1e-176	A0A0R0KI95_SOYBN; Uncharacterized protein
TrEMBL	A0A445LAQ0	1e-176	A0A445LAQ0_GLYSO; Transcription factor bHLH106
STRING	GLYMA03G28150.2	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6672	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	4e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]