PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30671.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 253aa    MW: 28660.7 Da    PI: 5.071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30671.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-192472355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  KHN30671.1 24 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 72
                9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-222381IPR016177DNA-binding domain
SMARTSM003803.1E-382386IPR001471AP2/ERF domain
PROSITE profilePS5103223.7752380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-322381IPR001471AP2/ERF domain
CDDcd000188.92E-342481No hitNo description
PfamPF008474.6E-122472IPR001471AP2/ERF domain
PRINTSPR003675.8E-122435IPR001471AP2/ERF domain
PRINTSPR003675.8E-124662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSPPPKASEQ VENKPVKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA  60
RAYDREARKI RGKKAKVNFP NEDDEYSIQA RHPIPPLPFT PQTQNPPLYQ QQYRCDLNIA  120
PKNLNFEFGY DLNHAGAFPS HVDAVNADSV VVSGDENSGL ASGSEGAYST TEFMGSSQNG  180
NGYLGVTAME KNEKETEVIE AQEEKNKVQE LSEELMAYEN YMKFYQIPYY DGQSTAPPNN  240
VQESLVGDLW SFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2224821574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30671.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977380.0BT097738.1 Soybean clone JCVI-FLGm-22B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241446.10.0uncharacterized protein LOC100780763
RefseqXP_028182587.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A0B2R8410.0A0A0B2R841_GLYSO; Ethylene-responsive transcription factor 1
STRINGGLYMA10G02080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-29ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]