PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30687.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 228aa    MW: 25179.9 Da    PI: 9.8455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30687.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-2063112356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  KHN30687.1  63 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 112
                 8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-3061121No hitNo description
SMARTSM003802.0E-3362125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3162120IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2262120IPR016177DNA-binding domain
PROSITE profilePS5103222.04962119IPR001471AP2/ERF domain
PRINTSPR003672.3E-106374IPR001471AP2/ERF domain
PfamPF008474.4E-1263112IPR001471AP2/ERF domain
PRINTSPR003672.3E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSATSDPSYH VSQFVQNQHQ AGSGDAHKMN KSLSNSQSKS FDENWLSATR TQPMKNGGRG  60
KLFKGVRQRH WGKWVAEIRL PRNRTRVWLG TFDTAEDAAI AYDTAAYILR GEYAQLNFPD  120
LKHVIQANSL NGTTAALVEA KLQAISKGGS SHRKPTDSPP GSSNKHNDEN GKLKSISGKD  180
SSIRLGAEIT ERSKSTHHET SDVEGVQLSR MPSLDMDIIW DELFVSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2058119163ATERF1
3gcc_A4e-2058119163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310950.0KT031095.1 Glycine max clone HN_CCL_19 AP2-EREBP transcription factor (Glyma20g33890.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618768.11e-169ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ02e-64ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A0B2RFT51e-169A0A0B2RFT5_GLYSO; Ethylene-responsive transcription factor ERF062
TrEMBLI1LCI21e-167I1LCI2_SOYBN; Uncharacterized protein
STRINGGLYMA10G33700.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-54ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]