PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30986.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 393aa    MW: 43688.8 Da    PI: 7.6615
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30986.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-1755115257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  KHN30986.1  55 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 115
                 89*****************99*************************************995 PP
2Wus_type_Homeobox1092.8e-3554115263
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++
         KHN30986.1  54 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKH 115
                        689*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-740114IPR009057Homeodomain-like
SuperFamilySSF466892.14E-1249121IPR009057Homeodomain-like
PROSITE profilePS5007110.07451116IPR001356Homeobox domain
SMARTSM003892.0E-853120IPR001356Homeobox domain
CDDcd000865.77E-854116No hitNo description
PfamPF000465.2E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSSSNRHWPN MFKSKPCNNP HNQWQHDINS SIVSTGGYQR SPYASGGEER TPEPKPRWNP  60
KPEQIRILEA IFNSGMVNPP RDEIRKIRVQ LQEYGQVGDA NVFYWFQNRK SRSKHMLRHF  120
QNSMNQNHNA EAQQQQKVDA SSLSQTTPPS SSSSSSDKSS SKELAYPIGF SFGFSNVNDV  180
AVPNSPAASV NQTYFQPHNH IDNNLLPQAT EPFSFTMHNN NVQGVVDKNT ITTLGFSVPQ  240
FSSNMMQSQL QCQQNVGPCT SLLLNEIMNY GTLSKKDQDE DKALKITHPQ LSFPLTSTPP  300
TTTIAPSIST VPCPITQLQG VGEVAGDRAK CTVFINGVEF EVVMGPFNVH QAFGDEAVLI  360
HSSGNPVPTD KRGITLHPLH HGAYYYLVCA CFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028241114.10.0WUSCHEL-related homeobox 9-like isoform X1
TrEMBLA0A445JZ750.0A0A445JZ75_GLYSO; WUSCHEL-related homeobox 9 isoform A
STRINGGLYMA07G32430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-62homeobox-3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]