PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31136.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 243aa    MW: 27729.3 Da    PI: 6.5758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31136.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-08133173954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  KHN31136.1 133 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 173
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-14129182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-10130178No hitNo description
PfamPF000104.3E-6134173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDINESITST FSNVVNSTWN HEKMGTEEHN IILHDHHQIP KGVGIWPHYN YPLHNIQPSS  60
SSNVAPSSSN FLTDILGVHF EEEEDEEEEE LGAMKEMMYK MAVMQPVDID PASVRKPKRR  120
NVRISDDPQS VAARHRRERI SEKIRILQRL VPGGTKMDTA SMLDEAIRYV KFLKRQIRFL  180
QSTPPPPINC NVGAAPNSEY YWPFAPNMLH SSTTTFIDMP VIGMEFNTRS HGHAGDSIHL  240
RQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522492.10.0transcription factor HEC3
RefseqXP_028227089.10.0transcription factor HEC3-like
TrEMBLA0A445L3J10.0A0A445L3J1_GLYSO; Transcription factor HEC3
TrEMBLK7KLH50.0K7KLH5_SOYBN; Uncharacterized protein
STRINGGLYMA04G39210.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-47bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]