PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31143.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 507aa    MW: 54981.3 Da    PI: 4.5384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31143.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.61.1e-4861322128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 +pGfrF+Ptd el+ ++Lk+kv+gkk++  e+i+e+d+yk+ PwdLp +  +k+++ +wyfF++r kky+tg r nrat++gyWk+tgkd+++ + +++
  KHN31143.1   6 MPGFRFQPTDVELIEYFLKRKVRGKKFPS-EIIAELDLYKFAPWDLPdMsLLKNGDLNWYFFCPRGKKYSTGGRLNRATEAGYWKTTGKDRAIEH-NNR 102
                 69**************************9.89**************96346677888*************************************9.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+ ktLvf++grapkg +tdWvmhe+rl
  KHN31143.1 103 VVGMIKTLVFHTGRAPKGDRTDWVMHEFRL 132
                 ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.1835155IPR003441NAC domain
SuperFamilySSF1019413.79E-586155IPR003441NAC domain
PfamPF023655.6E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAKPKMPGFR FQPTDVELIE YFLKRKVRGK KFPSEIIAEL DLYKFAPWDL PDMSLLKNGD  60
LNWYFFCPRG KKYSTGGRLN RATEAGYWKT TGKDRAIEHN NRVVGMIKTL VFHTGRAPKG  120
DRTDWVMHEF RLDDKVLADE GVLQDSYVIC RVYQKEGPGP RNGAQYGKPY EEKEWETDEE  180
IDSVQSAPVA AVCAPVPIQP SESHISVANY IHPSTSGCAG LTSVSCVSEL MPSCSTHPSA  240
PSNPVGTVSC VSELIPSCSE PHHLPSNNQV GSVSCVSEFM PSCSAHPSAP NSQVGSVSCV  300
SEFMPSCSAH PSAPNSQVGS VSCVSEFMPS CSAHPSAPNS QVGSVSSASE LMPSFSDHPS  360
APNNQVGSVS CVPELMTSCS AHPSAPNNQV DNDILSLLDC FFEDDDTLAV KENNRIENID  420
DPDQANNADG ALCSDPNAIF EELGDLNSLV GLGEGSFSCG QKNEYTTSEM LYTVDIFGSC  480
DHDFLELLDL ETPQLWLNKH GSGSQDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-46715617169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619120.0EU661912.1 Glycine max NAC domain protein (NAC10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028229671.10.0NAC domain-containing protein 82-like isoform X1
TrEMBLA0A445L3K70.0A0A445L3K7_GLYSO; NAC domain-containing protein 82 isoform A
STRINGGLYMA04G39140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.49e-80NAC domain containing protein 82
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]