PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN31158.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 201aa MW: 23158 Da PI: 4.7058

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN31158.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.8	2.2e-32	8	125	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGf F+Ptdeelv ++L k++ +++ ++i++++ ++ Pw+L+ k+ + +++yfF+k ++ nra ++gyWk tg ++++ls+ +++ KHN31158.1 8 LPPGFFFSPTDEELVLHFLYCKASLIPCHP-NIIPDLHPSQLAPWELNGKALLSGNQYYFFTKVNE--------NRARENGYWKDTGVTEPILSTFDKK 97 79***********************999.89**********9666677899999998754........788899***********99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyr 127 vg+kk Lvf+ g+ap+g++t+Wvm+ey KHN31158.1 98 VGMKKYLVFHIGEAPQGTETSWVMQEYY 125 ***************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.11E-40	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	37.997	8	160	IPR003441	NAC domain
Pfam	PF02365	2.1E-20	9	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEDGSVNLPP GFFFSPTDEE LVLHFLYCKA SLIPCHPNII PDLHPSQLAP WELNGKALLS 60 GNQYYFFTKV NENRARENGY WKDTGVTEPI LSTFDKKVGM KKYLVFHIGE APQGTETSWV 120 MQEYYICSSG FDTASYRSAR RRRKHDQSWS KWVLCKVYEK IRSQQGVNCY SDDDDSGSEL 180 SWLDEVYLSL DDDLEEIGMP I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-32	6	165	18	173	NAC domain-containing protein 19
3swm_B	9e-32	6	165	18	173	NAC domain-containing protein 19
3swm_C	9e-32	6	165	18	173	NAC domain-containing protein 19
3swm_D	9e-32	6	165	18	173	NAC domain-containing protein 19
3swp_A	9e-32	6	165	18	173	NAC domain-containing protein 19
3swp_B	9e-32	6	165	18	173	NAC domain-containing protein 19
3swp_C	9e-32	6	165	18	173	NAC domain-containing protein 19
3swp_D	9e-32	6	165	18	173	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN31158.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031209	0.0	KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304599.1	1e-151	NAC transcription factor 25
Refseq	XP_003523223.1	1e-151	NAC transcription factor 25 isoform X1
Swissprot	Q8GWK6	1e-56	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	I1JY11	1e-150	I1JY11_SOYBN; NAC transcription factor
STRING	GLYMA04G38990.1	1e-150	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-59	xylem NAC domain 1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]