PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN31293.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 179aa MW: 19897.8 Da PI: 7.381

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN31293.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.7e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++la +k+ KHN31293.1 11 SCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKD 109 6*********************************************************************************************99987 PP DUF260 100 e 100 + KHN31293.1 110 R 110 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.265	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	11	108	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004088	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKGYEPRSSS SCAACKLLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARCHAAAAA 120 ATTTIPSPDI LHANVSLPPF PDFCTSSSDF NDIFCHSSSS QLLGRHETVD DFNQIPYIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	6	113	6	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	6	113	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN31293.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236219	0.0	AC236219.2 Glycine max clone GM_WBc0096D17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003552283.1	1e-131	LOB domain-containing protein 21
Refseq	XP_028212459.1	1e-131	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	5e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A445FN55	1e-129	A0A445FN55_GLYSO; LOB domain-containing protein 21
TrEMBL	I1MZ09	1e-129	I1MZ09_SOYBN; Uncharacterized protein
STRING	GLYMA18G02910.1	1e-130	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-64	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]