PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31375.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 319aa    MW: 36079.8 Da    PI: 6.8665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31375.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2249.5e-08145166223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r snL+ H+r H
  KHN31375.1 145 FCEICGKGFRRDSNLRMHMRAH 166
                 6*******************99 PP
2zf-C2H210.90.0014242258521
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFsrksnLkrHir 21 
                  Cg++Fsrk+ L  Hi 
  KHN31375.1 242 TCGTTFSRKDKLFGHIA 258
                 6**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.6E-7141166No hitNo description
PROSITE profilePS5015712.113144171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-7144166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SMARTSM0035534210232IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.23E-5220274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSNSISDPTR IIHSQDPNTT ADPQVPLRNL SQVRNRMDSL QHFLSQSINT NTPLTVDQIA  60
MVSSQILSSI HQVIVNGAAL VSYSQNSIAA GAPDPPPYPK KPKPEPSVAD KAKQTLDSKL  120
EPLEGDDSEI VELDAVEILA EHMHFCEICG KGFRRDSNLR MHMRAHGEQF KTAEALAKWR  180
RWRSLRRPLR SGARRGFRNH FKRSHCPKMY TCERCRKKHF SVLSDLRSHL KHCGGEARWK  240
CTCGTTFSRK DKLFGHIALF EGHAPALACD EEGKGKQMVE DDEDPMLMSE SGFELDDCFL  300
DQEFPEGFFD DFGSIDDYC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352151e-143AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028211850.10.0zinc finger protein STOP1 homolog
SwissprotQ943I62e-51STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A445FMU10.0A0A445FMU1_GLYSO; Zinc finger protein STOP1-like
STRINGGLYMA18G02010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.38e-53C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]