PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31427.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 218aa    MW: 24699.6 Da    PI: 9.573
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31427.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.11.2e-071295790
        FAR1  7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                A+e GF  ++ +s ++    g+       C ++g+ + ++k+    r+ + + ++gC  +l+ k  +  + w+v+ +   HnHela
  KHN31427.1 12 AHENGFVAVIMRSDTEtGSRGRSSFVLIGCERSGTYKCRNKE--FVRKDTGSRKCGCPFRLRGKPVRgGEGWMVKLICGIHNHELA 95
                8999**99999988872344444455556*********9988..8999999*************9998999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-51295IPR004330FAR1 DNA binding domain
PfamPF105515.9E-9178217IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
RDDVLQWART VAHENGFVAV IMRSDTETGS RGRSSFVLIG CERSGTYKCR NKEFVRKDTG  60
SRKCGCPFRL RGKPVRGGEG WMVKLICGIH NHELAKSLVG HPYAGRLTKE EKKIIADMTK  120
SMVKPKNILL TLKEHNADSY TTIKQIYNAR SAYHEVVVCD LFWCHPDAVK LCNACHLVFF  180
IDSTYKTNRY RLPLLDFVGV TPTAMTFSAG FAYLEAER
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351180.0AC235118.1 Glycine max strain Williams 82 clone GM_WBa0027P10, complete sequence.
GenBankAC2352180.0AC235218.1 Glycine max strain Williams 82 clone GM_WBb0021C10, complete sequence.
GenBankAC2352560.0AC235256.1 Glycine max strain Williams 82 clone GM_WBb0037K19, complete sequence.
GenBankAC2354040.0AC235404.1 Glycine max strain Williams 82 clone GM_WBb0124F21, complete sequence.
GenBankAC2358640.0AC235864.2 Glycine max clone GM_WBb0106P01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598422.11e-130protein FAR1-RELATED SEQUENCE 4-like
TrEMBLA0A0B2RHZ31e-163A0A0B2RHZ3_GLYSO; Uncharacterized protein (Fragment)
STRINGXP_004507516.15e-81(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.14e-06FAR1-related sequence 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]