PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31580.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 356aa    MW: 40363.4 Da    PI: 6.3986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31580.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-13949141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                k i+n++ r  tf  Rr+ ++KK +E S+LC++e+++i++ 
  KHN31580.1  9 KLISNERSRRLTFKSRREILIKKTSEFSTLCGVEACLIVYD 49
                569************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.329152IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-12162IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-16178IPR002100Transcription factor, MADS-box
CDDcd002661.29E-18277No hitNo description
PRINTSPR004041.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRARITLKL ISNERSRRLT FKSRREILIK KTSEFSTLCG VEACLIVYDN GNGDVAPVTW  60
PKEPVLVHPI LQKYESQKNE RPPKTFGIED FLENRKNMVE ADISKVHKQI SNIKYPTWDP  120
SFTNMEEKQL KAFITQVNAK IMACDHVLQN KHQSKANNIM QNMAWGSASS SHIPSQITPT  180
PNNNGRVYVA NPINQFDGAS NHGMNMQQVD ACYGYIPTMA QESTNSTSSY PRQFNCLQNI  240
PQSQPIFEDL KPLDYKNEMV DFSYQVDVPL DSTNQLGVYA DWTNNQFGDF EDWINRPIDG  300
SNQPVNGDLV GLDNKPNESI LQNIPVQYQN KQQGGALHVL PPPLNGFQTD CYNVNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627212.10.0uncharacterized protein LOC106797420
RefseqXP_028216134.10.0uncharacterized protein LOC114398173
TrEMBLA0A0B2RDZ30.0A0A0B2RDZ3_GLYSO; Agamous-like MADS-box protein AGL86
STRINGGLYMA19G06145.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-23M-type_MADS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]