PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31930.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 579aa    MW: 62890.3 Da    PI: 4.228
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31930.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10245267426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C f+++tGtCk+G +CkF+H+
  KHN31930.1 245 EDCAFYLKTGTCKFGFNCKFNHP 267
                 89********************9 PP
2zf-CCCH28.82.1e-09291313325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 + +C++++r+G Ck+G  CkF+H
  KHN31930.1 291 QTECKYYLRSGGCKFGKACKFNH 313
                 679******************** PP
3zf-CCCH37.63.6e-12338361326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C++++rtG Ck+G++C+F+H+
  KHN31930.1 338 EKECHYYMRTGSCKFGANCRFNHP 361
                 679********************9 PP
4zf-CCCH29.11.7e-09472498127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f++tG Ck+ ++CkF+H++
  KHN31930.1 472 PGEPECSYFLKTGDCKFKSNCKFHHPK 498
                 5799*********************96 PP
5zf-CCCH33.76.1e-11520544327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +  C +++r+G+Ck+G+ CkF H+p
  KHN31930.1 520 QTVCTYYRRYGICKFGPACKFDHPP 544
                 568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.36E-6240269IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305241269IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-8245267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742288316IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4288315IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7291313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5292316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356335363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6336362IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5337362IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10338361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4341360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061471499IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4471498IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-7473498IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5476500IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6517545IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6517544IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413517545IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8520544IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4522542IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEPIESESVS SSAKDQQLGE PSSTVHPLDH DPQPSDLNRV TPVDDALGEE FQNKLDLKDG  60
GESENNGSNL EDGGEKLSED KGSNLEDASE KLGDEGAAAP EGGKGEGCDG DVGGVANDYG  120
VIGDDVVVAE DGGVVRDDLV VVDEDDDDGV AVRDDLVVVD EDDDDGVAVR DDLVVVDEDD  180
DDDGVVRNDV VVVVDVDGWN GSDEGCDWIE NENVNESESD KVGVEYKDER SSGKAQQYPL  240
RPEAEDCAFY LKTGTCKFGF NCKFNHPLRR KNLAKNENAG EREEQEERSG QTECKYYLRS  300
GGCKFGKACK FNHTRGKSSS ASSTAELNFL GLPIRVGEKE CHYYMRTGSC KFGANCRFNH  360
PDPTAIGGGD SPSGYGNGSS ISLQGVSQSS ISSWSSTRPL NEPAPFVPVI LSHNPGVSPQ  420
SSEWNGYQAP VYLSERSLHP PSTYVMNNPA IESNVYMHHQ KQMQVEEFPE RPGEPECSYF  480
LKTGDCKFKS NCKFHHPKNR IARLPPCNLS DKGLPLRPEQ TVCTYYRRYG ICKFGPACKF  540
DHPPPSTMAG LDQQSSYTNS AGVDVAENGD ADDGNQQSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353400.0AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581890.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_028236968.10.0zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0B2RF400.0A0A0B2RF40_GLYSO; Zinc finger CCCH domain-containing protein 43
STRINGGLYMA06G18253.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-119C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]