PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31934.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 222aa    MW: 25357.7 Da    PI: 8.116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31934.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18126176255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp+     +r++lg+f+++ +Aaka++ a+ k++g
  KHN31934.1 126 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDSEIDAAKAYDCAAFKMRG 176
                 8********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.04E-30125184No hitNo description
PROSITE profilePS5103224.316126184IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22126185IPR016177DNA-binding domain
PfamPF008477.0E-13126176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-31126185IPR001471AP2/ERF domain
SMARTSM003801.8E-35126190IPR001471AP2/ERF domain
PRINTSPR003674.3E-13127138IPR001471AP2/ERF domain
PRINTSPR003674.3E-13166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
LTTILFHHSD PLKMTTAEET SNLDLIRQHL LGENIISDSS FFSNLLHHPM KLEAPSSPEF  60
DFTSYISDNT SFFTFLEGYD LMADMKFVDS DNTIPSKEVK KCNISPEPLV SSKEKPKKLE  120
YDKAKRYRGV RRRPWGKFAA EIRDPTRKGT RVWLGTFDSE IDAAKAYDCA AFKMRGQKAI  180
LNFPLEAGLS DPKPNSCGRK RRRESHDHEL ELPQVQVHHG VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28123185264ATERF1
3gcc_A1e-28123185264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198202RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894820.0BT089482.1 Soybean clone JCVI-FLGm-2G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235847.21e-156DNA-binding domain-containing protein
RefseqXP_028220065.11e-156ethylene-responsive transcription factor ERF107-like
TrEMBLA0A0B2RHZ01e-165A0A0B2RHZ0_GLYSO; Ethylene-responsive transcription factor ERF106 (Fragment)
STRINGGLYMA20G16920.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-43ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]