PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32593.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 114aa    MW: 13030.2 Da    PI: 9.5305
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32593.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.5e-129411547
                HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47
                kR +   KKA+ L +LCda+v++i+fsstgkl+
  KHN32593.1  9 KRIENTTKKANKLTILCDAKVSIIMFSSTGKLH 41
                7888888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.624147IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-12146IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-16371IPR002100Transcription factor, MADS-box
PfamPF003191.4E-9941IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-8924IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-82445IPR002100Transcription factor, MADS-box
SuperFamilySSF893608.24E-765113IPR000361FeS cluster biogenesis
Gene3DG3DSA:2.60.300.125.4E-866113IPR000361FeS cluster biogenesis
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MARGKIQIKR IENTTKKANK LTILCDAKVS IIMFSSTGKL HKIEQSTKQF FDQYQMTLGV  60
DIWNSHYEIL VALTGEKGKF DELLEDKGVN ILIDPKAHMN VIGTKMDFVD DKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352111e-70AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028215152.15e-43floral homeotic protein PMADS 1-like
SwissprotQ074726e-27MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLA0A0B2RKW05e-78A0A0B2RKW0_GLYSO; Floral homeotic protein PMADS 1
STRINGGLYMA18G33910.11e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-21MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]