PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32626.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 641aa    MW: 71236.6 Da    PI: 7.4846
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32626.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-171421556
                HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  KHN32626.1  1 MEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 42
                79************************************9877 PP
2START225.71.4e-701583804206
                 HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 ++a+ el+k+a+++ep+W +s     e++n+de++++f+ +++       +s+ea+r+++vv+ +l+ lv+++ld++ qW+e+++    ka+t++vi++
  KHN32626.1 158 NQAMGELIKMATVGEPLWLRSFetgrEILNYDEYVKEFAVENSsssgkpkRSIEASRDTAVVFVDLPSLVQSFLDVN-QWKEMFPclisKAATVDVICN 255
                 67999****************99***************9888899********************************.********************* PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                 g      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh +++++ +h+
  KHN32626.1 256 GeglsrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHSECQKSAVHS 353
                 *******************************************************98.9**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 180 llrslvksglaegaktwvatlqrqcek 206
                 ++r +v+sgla+ga++w atlq qce+
  KHN32626.1 354 MYRTIVNSGLAFGARHWIATLQLQCER 380
                 *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000865.51E-14142No hitNo description
PROSITE profilePS5007116.115144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-15152IPR009057Homeodomain-like
SuperFamilySSF466898.77E-14149IPR009057Homeodomain-like
PfamPF000461.1E-14142IPR001356Homeobox domain
SMARTSM003892.2E-6148IPR001356Homeobox domain
PROSITE patternPS0002701942IPR017970Homeobox, conserved site
PROSITE profilePS5084838.815146383IPR002913START domain
SuperFamilySSF559612.47E-31148380No hitNo description
CDDcd088758.19E-112150379No hitNo description
SMARTSM002341.5E-66155380IPR002913START domain
PfamPF018521.7E-55158380IPR002913START domain
Gene3DG3DSA:3.30.530.202.4E-4211375IPR023393START-like domain
SuperFamilySSF559612.2E-12402603No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MEALFKESPH PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKSEIEKL  60
KEKNKSLRET INKACCPNCG VPTTSRDGVM PTEEQQLRIE NAKLKAEVEK LRAALGKYAP  120
GSTSPSCSSG HDQENRSSLD FYTGIFGLDK SRIMDIVNQA MGELIKMATV GEPLWLRSFE  180
TGREILNYDE YVKEFAVENS SSSGKPKRSI EASRDTAVVF VDLPSLVQSF LDVNQWKEMF  240
PCLISKAATV DVICNGEGLS RNGAVQLMFA ELQMLTPMVP TREVYFVRFC KQLSAEQWAI  300
VDVSIDKVED NIDASLVKCR KRPSGCIIED KSNGHCKVIW VEHSECQKSA VHSMYRTIVN  360
SGLAFGARHW IATLQLQCER LVFFMATNVP MKDSTGVATL AGRKSILKLA QRMTWSFCHA  420
IGASSIHAWT KVTSKTGEDI RISSRKNLND PGEPLGLILC AVCSVWLPVS PNVLFDFLRD  480
ENRRTEWDIM SSGGTVQSIA NLAKGQDRGN AVAIQTIKLK ENSVWILQDS CTNLYESMVA  540
YACVDITGIQ SVMTGCDSSN LAILPSGFSI IPDGLESRPL VISSRQEEKN TEGGSLFTMA  600
FQILTNASPT AKLTLESVDS VNTLVSCTLR NIRTSLQCED G
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32626.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188484.10.0homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A445IEX50.0A0A445IEX5_GLYSO; Homeobox-leucine zipper protein GLABRA 2 isoform A
STRINGGLYMA13G43350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]