PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32797.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 322aa    MW: 37077.3 Da    PI: 6.8801
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32797.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2491.8e-76732073374
        GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetger 164
                 +s+ee+ a++ ++ vsP+++f+h+taNqaIlea e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    + +el+et+ r
  KHN32797.1   7 TSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEeernnKALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGN----NLKELQETEAR 101
                 47788889999************************9988887889**********************99755566*********....99********* PP

        GRAS 165 LakfAeelg..vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                 L +f + +g  + fef+ l      + ++ +Lr k++E++aVnlv  l +      +  +  +++L +v slsP +vv+v qe +++ ++Fl rf+e+l
  KHN32797.1 102 LVSFSKGFGnhLVFEFQGL---LRGSSRVFNLRKKKNETVAVNLVSYLNTSS----CFMK-VSDTLGFVHSLSPSIVVLVKQEGSRSLKTFLSRFTESL 192
                 ******9973366777775...33455679****************888775....4444.578*********************************** PP

        GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvva..cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s.......dg.. 348
                 +y++a+fdsl+  lp es er k+E+++lg+ei++++   + g +   + e++e+W+ r+e+ GF   ++s+k + qaklll++           +g  
  KHN32797.1 193 HYFAAMFDSLDDCLPLESTERLKIEKKVLGKEIKSMLNydMDGVDYCPKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRThYyplqfeeEGgg 291
                 *************************************822457778999*********************************98651111111112123 PP

        GRAS 349 .yrveee.sgslv.lgWkdrpLvsvSaWr 374
                  +rv e+ +g ++ lgW++r L++vS+W+
  KHN32797.1 292 gFRVSERdEGRVIsLGWQNRFLLTVSSWQ 320
                 36666654555558**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.8211287IPR005202Transcription factor GRAS
PfamPF035146.4E-747320IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLMEEPTSEE EFLAFTDLYR VSPYYQFAHF TANQAILEAY EEEEERNNKA LHVIDFDVSY  60
GFQWPSLIQS LSEKATSGNR ISLRITGFGN NLKELQETEA RLVSFSKGFG NHLVFEFQGL  120
LRGSSRVFNL RKKKNETVAV NLVSYLNTSS CFMKVSDTLG FVHSLSPSIV VLVKQEGSRS  180
LKTFLSRFTE SLHYFAAMFD SLDDCLPLES TERLKIEKKV LGKEIKSMLN YDMDGVDYCP  240
KYERMETWKG RMENHGFVGR KISSKCVIQA KLLLKMRTHY YPLQFEEEGG GGFRVSERDE  300
GRVISLGWQN RFLLTVSSWQ PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-461432198380Protein SCARECROW
5b3h_A6e-461432197379Protein SCARECROW
5b3h_D6e-461432197379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206621.10.0scarecrow-like protein 21
TrEMBLA0A0B2RLU40.0A0A0B2RLU4_GLYSO; DELLA protein GAI
TrEMBLA0A445GJ830.0A0A445GJ83_GLYSO; DELLA protein GAI
STRINGGLYMA16G27310.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-49GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]