PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN32922.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1098aa    MW: 121451 Da    PI: 6.9198
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN32922.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.96.9e-22114215199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ a+++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++l+
  KHN32922.1 114 FCKQLTASDTSTHGGFSVPRRAADKIfppldySMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQLL 209
                 99*****************************9545444.38************************************************..5688889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  KHN32922.1 210 LGIRRA 215
                 ***997 PP
2Auxin_resp117.51.1e-38240323183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr +Gtv+g+sdldpv+W+nS+Wr+L+
  KHN32922.1 240 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRHMGTVTGISDLDPVQWKNSQWRNLQ 323
                 79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-42103243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-40106229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-17113205No hitNo description
PfamPF023621.1E-19114215IPR003340B3 DNA binding domain
SMARTSM010191.5E-21114216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702114216IPR003340B3 DNA binding domain
PfamPF065071.9E-33240323IPR010525Auxin response factor
PfamPF023093.6E-69851071IPR033389AUX/IAA domain
PROSITE profilePS5174527.1479861070IPR000270PB1 domain
SuperFamilySSF542778.63E-69991064No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKKKSSIKAE LWHACAGPLV KLPPSGTHVI YFPQGHSEQV SASLNRDVHS QIPNYPNLPS  60
KLLCLLHTLT LHADPQTDQV YAQITLQPLP SFDKDALLRS DLALESTKPP PDFFCKQLTA  120
SDTSTHGGFS VPRRAADKIF PPLDYSMQPP AQELVARDLH DTVWTFRHIY RGQPKRHLLT  180
TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA  240
AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKSVYSHQPS LGMRFRMMFE TEDSGTRRHM  300
GTVTGISDLD PVQWKNSQWR NLQVGWDEST AGEKRSRVSI WEIEPVTAPF FICPPPFFRS  360
KRPRQPGMPD DELSDFDNIF KQTMPWPGDD MCVKDPQGLP GLNLAQWMNM QQNPALASSL  420
QPNYAPSLSG SILQNIPGPD ISHQLGFSAP QISQSNNVAL NTQRLLQTAP QLDHLQKLPS  480
TSSTLGTVLP PQQQLGDITQ QSRQNLANQT IPQGQVQAQL VHPQNIVQTN NILQQQQPSS  540
QNHQLHRSLS QNPSQQQQQT IIGQNQHQNL IQSPMPDHVQ QLQMSDDQIQ LQLLQKLQQQ  600
KQTLLAQQTA LQHSTQLTQI QDRQRQLLDK THNLSRALTP GQVREIPPIF QNSLPKANSI  660
SNPITKANCQ SNIQFYQQPK LQQQQPGLLS EMPGHTALHP TTTTNQLSAA GSSILTGAGG  720
AGQSVITDEV LSCSTSPSAN NCTNALPQLI NSRFQRSTLV GDDMAQSAAT ILSSSALETT  780
SSNANMLKDL QPKSEVKPSL NISKIQNQGH FAPQTYLNGN AAHTDCLDTS SSTTSVCLSQ  840
NDAHMHQNNN PLSYNPQSLL FRDNNQDGEV QADARSNIPY ANNIDSQMGM PLNPDSLSTK  900
GTLRLGKDLS NNFSSEGMLG NYEINRDAQQ EPSSSMVSQT FGVPDMAFNS IDSTIDDSNF  960
LNSGPWAPPP APPLPPLPPA QFQRMRTYTK VYKRGAVGRS IDITRYSGYE ELKQDLARRF  1020
GIEGQLEDRQ RIGWKLVYVD HESDVLLLGD DPWEEFVNCV RCIKILSPQE VQQMSLDGDF  1080
GNGGLPNQAC SSSDGGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-162334447388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN32922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225984.10.0auxin response factor 19-like
TrEMBLA0A0B2RM450.0A0A0B2RM45_GLYSO; Auxin response factor
STRINGGLYMA01G00510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]