PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33180.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 246aa    MW: 27533.8 Da    PI: 7.2857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33180.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-1367113354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r+h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +++L
  KHN33180.1  67 RNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVQRVREL 113
                 58*************************8.....7************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.73964113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-1167113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-1267118No hitNo description
SuperFamilySSF474591.44E-1467124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1468122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.5E-5160223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENSELFQFL TNTNDAFFNT ASYGLPAAPA ASTMQHSFSG SFSYYPLEAS HDHHAPSHED  60
KALAALRNHK EAEKRRRERI NSHLDKLRTL LPCNSKTDKA SLLAKVVQRV RELKQQISSL  120
SDSEAFPSET DEVSVLSTSG DNDDHGGCDD NDGRLIFKAS LCCEDRSDLI PELIEILRSL  180
RLKTLKAEMA TLGGRTRNVL VVATDKDHSG ESIQFLQNSL KSLVERSSNS NDRSKRRRVL  240
DRKFIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234238KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520293.20.0transcription factor bHLH106
RefseqXP_028208327.10.0transcription factor bHLH106-like
SwissprotO806746e-73BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0B2RIV31e-180A0A0B2RIV3_GLYSO; Transcription factor bHLH106
TrEMBLA0A445LQ151e-179A0A445LQ15_GLYSO; Transcription factor bHLH106
TrEMBLK7K8S91e-179K7K8S9_SOYBN; Uncharacterized protein
STRINGGLYMA02G23590.21e-180(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]