PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33302.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 241aa    MW: 26485.6 Da    PI: 4.5164
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33302.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.83.9e-07444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 C+ +e+ +++  C  ++  lC++C +e H        H++
  KHN33302.1  4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                7*****************************65667777765 PP
2zf-B_box30.66.8e-105394237
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                + ++C+ +++k++ +fC +++ l+C+dC + +H+       H
  KHN33302.1 53 KLPTCDICQDKPAFIFCVEDRALFCQDCDEPIHSAgslsanH 94
                689******************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
CDDcd000219.26E-7347No hitNo description
PfamPF006431.6E-5444IPR000315B-box-type zinc finger
SMARTSM003368.7E-10447IPR000315B-box-type zinc finger
SMARTSM003361.0E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.9735299IPR000315B-box-type zinc finger
PfamPF006439.7E-95395IPR000315B-box-type zinc finger
CDDcd000211.55E-75798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SSKLPTCDIC  60
QDKPAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVASSSNC TKDNEKSHSE  120
PPNRSAQQVS AKIPPQQVPS FTSSWAVDDL LELTGFESPE KKESLQFGEL EWLTDVGIFG  180
EQFAQEALAA AEVPQLPETH NSSSVASYKT SKSYMSHKKP RIEVLNDDDD DDEYFTVPDL  240
G
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33302.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0960880.0BT096088.1 Soybean clone JCVI-FLGm-20I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204046.11e-179B-box zinc finger protein 24-like
SwissprotQ962885e-94BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A445GN991e-176A0A445GN99_GLYSO; B-box zinc finger protein 24 isoform B
TrEMBLA0A445GND91e-177A0A445GND9_GLYSO; B-box zinc finger protein 24 isoform A
STRINGGLYMA15G03400.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.17e-80DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  5. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]