PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33306.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 260aa    MW: 29278 Da    PI: 8.8371
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33306.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.44.9e-2897184291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fYn+YAk+vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw++tk+  eH+H+l+p
  KHN33306.1  97 FYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTP 184
                 ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-2597184IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKEYFVAAVE FGIDASINGE TVGNATIVQI NSSTADGNKV GCSSFNPAYK QGHDDNITQD  60
SSGGDTIPSG IPAVSVASVD EPYVGQEFES EAAAHAFYNA YAKRVGFIIR VSKLSRSRRD  120
GTAIGRALVC NREGYRMPDK REKIVRQRAE TRVGCRAMIL VRKVSSGKWV ITKFIMEHTH  180
PLTPGKGRRD CIYEQYPNEH DKIRELSQQL AIERKRSATY KRHLELIFEQ IEEHNDSLSK  240
KIQHIVDSVK EMETKEQNQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202432.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
TrEMBLA0A445GNE10.0A0A445GNE1_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A
STRINGGLYMA15G03440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-98FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]