PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33310.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 193aa    MW: 22597.8 Da    PI: 10.1604
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33310.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.73e-2611101190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++  +++++    + + tr gC+a++++ ++++gkw+vtk+++eH+H+l+
  KHN33310.1  11 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYLHRKDR-VlpPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHKLM 101
                 6******************************************99883333.2448899*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-2311101IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEFNSREEAR EFYIAYGRRI GFTVRIHHNR RSRVNNQVIG QDFVCSKEGF RAKKYLHRKD  60
RVLPPPPATR EGCQAMIRLA LRDRGKWVVT KFVKEHTHKL MSPSKVPCRG SGKHLVSEDE  120
KDKRIRELSL ELYNERQKCK RRCAAYEEQL NVILNDLEKH TEHISKKVAA VVRSIREIEE  180
EKSDSDGGQL EPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-149AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546989.11e-141protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_006597226.11e-141protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_028203073.11e-141protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028203074.11e-141protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445GNF11e-140A0A445GNF1_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A
TrEMBLK7M9951e-140K7M995_SOYBN; Uncharacterized protein
STRINGGLYMA15G03470.31e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-40FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]