PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN33339.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 345aa MW: 38989.7 Da PI: 7.8764

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN33339.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	183	202	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ KHN33339.1 183 FSCPLCFKTFNRYNNMQMHM 202 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.9E-5	183	202	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	183	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	185	205	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.78E-5	249	287	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.2E-4	254	287	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MTHPYCSNDF NAWFDLNSPC LFSTSSSPCS NNPPFYFPTS NTNYLHNCTN NDISFTQHIQ 60 SSPSSFPLPK EELPLLNLSP ARGEDLESSF SAMKVNKEKE KELSMSANNN SLDDETAVTV 120 ALHLGLPSTT TTTTSSADLT SNVYSDKEDK KDTVASEYSP TRINKGQYWI PTPAQILIGP 180 TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCKNNI 240 DHPRAKPLKD FRTLQTHYKR KHGFKPFMCR KCCKAFAVRG DWRTHEKNCG KLWYCSCGSD 300 FKHKRSLKDH IKAFGNGHKA YGIDSCLDQD DEAGSEIEQE NNESF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MTHPYCSNDF NAWFDLNSPC LFSTSSSPCS NNPPFYFPTS NTNYLHNCTN NDISFTQHIQ  60
SSPSSFPLPK EELPLLNLSP ARGEDLESSF SAMKVNKEKE KELSMSANNN SLDDETAVTV  120
ALHLGLPSTT TTTTSSADLT SNVYSDKEDK KDTVASEYSP TRINKGQYWI PTPAQILIGP  180
TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCKNNI  240
DHPRAKPLKD FRTLQTHYKR KHGFKPFMCR KCCKAFAVRG DWRTHEKNCG KLWYCSCGSD  300
FKHKRSLKDH IKAFGNGHKA YGIDSCLDQD DEAGSEIEQE NNESF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN33339.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095633	0.0	BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304535.2	0.0	zinc finger protein WIP5-like
Refseq	XP_028203058.1	0.0	zinc finger protein WIP2-like
Swissprot	Q8W031	1e-128	ZWIP5_ARATH; Zinc finger protein WIP5
Swissprot	Q9SVY1	1e-128	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A445GNJ2	0.0	A0A445GNJ2_GLYSO; Zinc finger protein WIP2
TrEMBL	I1MDA5	0.0	I1MDA5_SOYBN; Uncharacterized protein
STRING	GLYMA15G03830.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]