PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33407.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 174aa    MW: 19404.5 Da    PI: 8.9783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33407.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000484062123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                +kC+ C+++Fs+   L  H  +H
  KHN33407.1 40 FKCKTCNRRFSSFQALGGHRASH 62
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0864062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3674067IPR007087Zinc finger, C2H2
SuperFamilySSF576672.13E-740112No hitNo description
PfamPF139127.0E-124064IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SMARTSM003550.2990112IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-890113IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKRGREESKL DMANCLMLLT KVGESETNYP ISKGSDIGDF KCKTCNRRFS SFQALGGHRA  60
SHKKPKLMVT DLSCHQELPN PTMKQQPRMH PCPICGLEFA IGQALGGHMR KHRTAINDGL  120
LCGKPSSSLS ILKESSKDGD QKLNLRLDLN LNLTPLEEDD LKLNLRTPVL NCFI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33407.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354040.0AC235404.1 Glycine max strain Williams 82 clone GM_WBb0124F21, complete sequence.
GenBankDQ0551340.0DQ055134.2 Glycine max C2H2 transcription factor (C2H2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203097.11e-125zinc finger protein ZAT12-like
TrEMBLA0A445GNX01e-124A0A445GNX0_GLYSO; Zinc finger protein ZAT12
STRINGGLYMA15G04570.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]