PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33452.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 193aa    MW: 21285.7 Da    PI: 6.761
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33452.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.7e-16133161432
        GATA   4 CgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                 C+t kTp+WR+gp g+ktLCnaCGl y k
  KHN33452.1 133 CKTRKTPMWRKGPLGPKTLCNACGLQYLK 161
                 *************************9966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.9E-12119164No hitNo description
SMARTSM004011.1E-7122175IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-13123161IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.07E-12128173No hitNo description
PfamPF003201.4E-13133161IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.172133159IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDSGKTNEAS NSKLVHDFDL NIAYVEEFDH VNAENEFSSP ILVNTTQQAC KNSIENMNIE  60
DAIANNRDTT IQANSAAKGA TSEDTRQVEP KYIASVSFTP ARISQYLRRR RHYRGAESKQ  120
STDPDKLCTN FYCKTRKTPM WRKGPLGPKT LCNACGLQYL KMVKGTGSGL PAAVSDEGDA  180
SVPAETVERD SNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598297.11e-141GATA zinc finger domain-containing protein 9
TrEMBLA0A445GPA11e-143A0A445GPA1_GLYSO; GATA transcription factor 29
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2017433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-13GATA transcription factor 29
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]