PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33532.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 566aa    MW: 62976.2 Da    PI: 4.6401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33532.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013176198223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C +C++sF+ k+++ +H+ + H
  KHN33532.1 176 ECRKCNMSFNEKDLYLQHLLSfH 198
                 7******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.03242114IPR001739Methyl-CpG DNA binding
SuperFamilySSF541713.04E-64897IPR016177DNA-binding domain
SMARTSM003550.63175198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177198IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642222249IPR007087Zinc finger, C2H2
SMARTSM003550.37222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MTATAASTLL TKTASLSISN CWPTPKTPSP RNSRDAPRKR RIVDSADFGD VLPLSWKILL  60
GLKRKDGRAW IYCRRYISPS GQHFVSCKEV SSYLQSLLGN GDAQLQISRR TENVVQEHKL  120
SADNSAAVTK EHQDEMQIVA VNMAVSGLSA ANERVKEVAL LGIENLADVQ IHDLLECRKC  180
NMSFNEKDLY LQHLLSFHQR TTRRYRLGSS VGDGVIIKDG KFECQFCHKV FLERRRYNGH  240
VGIHVRNYVR KVEDSPGQPN VQGTDDKSPV REDFPLRISK MDALIEIAQN SIMEDTVTEP  300
HSSAKLNRIP GSDAVGYLDQ DGNSESPVSE QQMEDSMTGK NVDHDLDEKV EEIDDDNHAI  360
DVKDDVPLTI EELDQSGMDL DDNSQNCLLP LSEHHIIPES EKSENSVCAN TKGQFILDEG  420
ISNKSELEFS LNGLKDVPVT VSTNVQEMVR PASEENVVHS WDFNSSISTE QSLGCLPAFN  480
SDEGGKQFCS VDHEHDNVKG FQELRFDEID IVEYDFCVWC GIEFDHDAVN SEIQPDSVGF  540
MCPASKAKIS GQVNVLDCGS PNAGCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235956.20.0uncharacterized protein LOC100526917
RefseqXP_006584521.10.0uncharacterized protein LOC100526917 isoform X1
RefseqXP_028244202.10.0uncharacterized protein LOC114422180
RefseqXP_028244203.10.0uncharacterized protein LOC114422180
TrEMBLA0A445JG630.0A0A445JG63_GLYSO; Methyl-CpG-binding domain-containing protein 8 isoform A
TrEMBLK7L7D50.0K7L7D5_SOYBN; Uncharacterized protein
STRINGGLYMA08G19033.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]