PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33618.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 213aa    MW: 24991.5 Da    PI: 5.7876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33618.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-064591455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++ e+ErrRR+++ +++  Lr++ P       + ++  +i   A+ YI +Lq
  KHN33618.1 45 KNLEIERRRREKLSTRLLMLRSINPII-----TNMNRGTIIVDAITYIEKLQ 91
                6679*********************96.....68*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.1854190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1242106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1242110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-64395No hitNo description
SMARTSM003532.2E-54796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEYQDEDHLC FTMEEFALAT ENVSSRQRMS RKRNYDDDTR VYKSKNLEIE RRRREKLSTR  60
LLMLRSINPI ITNMNRGTII VDAITYIEKL QHEVQRLSQE LHQLEATSEK TAEAKVDEID  120
AVEDMKHWGI QAEVRVAQID ENKLWVKIII EKKRGRFSKL MEALNNFGIE LIDTNFTTTK  180
GAFLITSCIQ VKDGERLEIN QSKSLLQEII NDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028203567.11e-155transcription factor DYT1-like
TrEMBLA0A445GPY51e-154A0A445GPY5_GLYSO; Transcription factor DYT1 isoform B
STRINGGLYMA15G06960.21e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.19e-45bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]