PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33774.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 350aa    MW: 39932.3 Da    PI: 7.9791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33774.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.9e-52221491128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeel+++yL+ kv +++++    ++evd++++ePw+Lp  +k +e+ewy Fs rd+ky+tg r+nrat +gyWkatgkdkev+s+ +g+
  KHN33774.1  22 LPPGFRFHPTDEELITFYLASKVFNDTFSN-LKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSAsSGT 119
                 79*************************998.459**************8888899**************************************997788 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 l g+kktLvfykgrap+gekt+Wvmheyrl
  KHN33774.1 120 LLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6217173IPR003441NAC domain
PROSITE profilePS5100558.73822173IPR003441NAC domain
PfamPF023651.0E-2623149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLAMEELLCE LSDHEKRNEQ GLPPGFRFHP TDEELITFYL ASKVFNDTFS NLKFAEVDLN  60
RCEPWELPDV AKMGEREWYL FSLRDRKYPT GLRTNRATGA GYWKATGKDK EVYSASSGTL  120
LGMKKTLVFY KGRAPRGEKT KWVMHEYRLD AHFSLPHTYP SKEEWVICRI FHKSGEKRTP  180
VLQVQGHSDA SSSPIKSSLP PLLASSSHSQ LRDFQSPVLI HQQDQNGLSH PHLFPLEISN  240
ARNHPSDLLF KPLQQNCTLK TKEQTIIPKV IKTEDATFYH QLLDDHNNMR CVNKLNQNPS  300
NFLNTFPLEV DAGLMAFSGA ANAQAREIST ASTPFNRVAL QQMLDSWPLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-511917612171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33774.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944381e-107BT094438.1 Soybean clone JCVI-FLGm-14N1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226979.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8512e-93NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A445KUM10.0A0A445KUM1_GLYSO; Protein CUP-SHAPED COTYLEDON 3 isoform A
STRINGGLYMA04G01651.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.14e-95NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  4. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  5. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  6. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]