PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33880.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 191aa    MW: 20957.5 Da    PI: 6.5776
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33880.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.91.4e-2459113358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  + +Y+eClkNh +++G+h++DGC  f+p  g+egt +alkC  C+ HRnFHR+e+ 
   KHN33880.1  59 NEKYHECLKNHTVKIGSHTLDGCIKFLPL-GKEGTLDALKCIVCNYHRNFHRKETP 113
                  679*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.0E-2161111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.8E-2461112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1661112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.61862111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEFKQHVETE LRMPVATVSH EDFGIPPSSQ GEEEPVAAAI PVVIPMTPTP PTMSQNNNNE  60
KYHECLKNHT VKIGSHTLDG CIKFLPLGKE GTLDALKCIV CNYHRNFHRK ETPNDTYLVP  120
YYRHSSLPLA AYYGEQVGYP HVQGQQCTTL ALPSRSRGSG GAHSSREDME AMSDPTSGAT  180
PHGGSNKALQ D
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350420.0AC235042.1 Glycine max strain Williams 82 clone GM_WBa0093J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518104.11e-123zinc-finger homeodomain protein 2
TrEMBLA0A0B2RL061e-141A0A0B2RL06_GLYSO; ZF-HD homeobox protein
STRINGGLYMA02G31190.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-22homeobox protein 22
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]