PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34020.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 227aa    MW: 25850.3 Da    PI: 9.2659
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34020.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30158216159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++++prsYYrC + +C+vkk+ver aedp++v++tYeg+H h+
  KHN34020.1 158 LDDGYKWRKYGQKVVKSTHHPRSYYRCIQDNCRVKKRVERFAEDPRMVITTYEGRHVHS 216
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-32143216IPR003657WRKY domain
SuperFamilySSF1182901.31E-27150217IPR003657WRKY domain
PROSITE profilePS5081128.472153218IPR003657WRKY domain
SMARTSM007743.9E-33158217IPR003657WRKY domain
PfamPF031067.7E-24159215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSTTSHSIVH HSLFEEQDQM PTQIGFFPFP TNLTFPPLGC HQSSLKAFSS IAPSSSLVIS  60
QQDSVSNLTA ETLFSTTAQK SREDLTSSFR GAQFLSLHRL SVNPWALGEV ADCFSCKRSG  120
IDDHHLGISA TKMKKIKARR KVREPRFCFK TMSDMDVLDD GYKWRKYGQK VVKSTHHPRS  180
YYRCIQDNCR VKKRVERFAE DPRMVITTYE GRHVHSPSND LEDSIST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25149215874Probable WRKY transcription factor 4
2lex_A1e-25149215874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909140.0BT090914.1 Soybean clone JCVI-FLGm-5N5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237342.21e-149WRKY transcription factor 40
RefseqXP_028246516.11e-149probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB72e-55WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0B2RLD41e-169A0A0B2RLD4_GLYSO; Putative WRKY transcription factor 13
STRINGGLYMA05G31910.11e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.19e-57WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]