PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN34093.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YB

Protein Properties

Length: 207aa MW: 23725.3 Da PI: 6.2463

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN34093.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.6	5.7e-56	35	130	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyveplk+yl+ky+e+egek KHN34093.1 35 KEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKEIEGEK 130 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-53	32	154	IPR009072	Histone-fold
SuperFamily	SSF47113	5.59E-41	37	146	IPR009072	Histone-fold
Pfam	PF00808	2.0E-27	40	104	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.7E-20	68	86	No hit	No description
PROSITE pattern	PS00685	0	71	87	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.7E-20	87	105	No hit	No description
PRINTS	PR00615	1.7E-20	106	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEDESHNNTL PNGFNTGSPE SPFLKTSTTT TQHNKEQDRF LPIANVGRIM KKVIPPNGKI 60 SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDV IWAITTLGFE DYVEPLKTYL 120 QKYKEIEGEK LSIPKQMRSE QRLQQHHNNY HDQNNQPFNG AYASSNLISQ PPYVPTDQKF 180 SLTFSPNSIQ SQLRQQDQID SVGHWYE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	8e-45	35	125	3	93	NF-YB
4awl_B	7e-45	35	125	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	7e-45	35	125	4	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN34093.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003524310.1	1e-155	nuclear transcription factor Y subunit B-7-like
Refseq	XP_028233311.1	1e-155	nuclear transcription factor Y subunit B-7-like
Swissprot	Q9SIT9	2e-68	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A0B2RPC7	1e-154	A0A0B2RPC7_GLYSO; Nuclear transcription factor Y subunit B-7
TrEMBL	I1K511	1e-154	I1K511_SOYBN; Uncharacterized protein
STRING	GLYMA05G32680.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	1e-66	nuclear factor Y, subunit B7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]