PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34137.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 337aa    MW: 38118.9 Da    PI: 7.6642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34137.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.8e-191663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++lvd ++++G g+W++ +r  g++R++k+c++rw +yl
       KHN34137.1 16 KGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 63
                     79********************************************97 PP
2Myb_DNA-binding51.62.2e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++l+++++  lG++ W++Ia++++ gRt++++k+ w+++l
       KHN34137.1  69 RGKFSDEEEQLIINLHSALGNK-WAAIASHLP-GRTDNEIKNLWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4731163IPR017930Myb domain
SuperFamilySSF466891.61E-3113110IPR009057Homeodomain-like
SMARTSM007172.4E-151565IPR001005SANT/Myb domain
PfamPF002496.6E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241770IPR009057Homeodomain-like
CDDcd001674.55E-121863No hitNo description
PROSITE profilePS5129426.14964118IPR017930Myb domain
SMARTSM007173.7E-1568116IPR001005SANT/Myb domain
PfamPF002492.2E-1569114IPR001005SANT/Myb domain
CDDcd001673.21E-1171114No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2771119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMRTPIASND ESGLKKGPWS PEEDKILVDF IEKHGHGSWR ALPRLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSDEEEQLI INLHSALGNK WAAIASHLPG RTDNEIKNLW NTHLKKKLMQ  120
MGLDPVTHRP RTDNLNLLSN LQQILAAAKI VSSLTNPSAL SWLQSDATLQ LLQNMYARPT  180
ASNSDPLINP FRTLNSLPDS YSLLNDLLGF NLHSNLQNLY DGNSLSQIQP NFQNFEAPQQ  240
PTQHLNGGRN TSFRESQKQF GSTNNIADPS LSSSLPNLVS ASPERSPFKE AENIMVNSKD  300
CSTSFELTWG DFMDEETTET YWKGFIDRVS VLRIFYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141185108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34137.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573852.10.0transcription factor MYB53
RefseqXP_028180156.10.0transcription factor MYB53-like
SwissprotQ9S9Z21e-79MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A445M7F10.0A0A445M7F1_GLYSO; Transcription factor MYB93 (Fragment)
STRINGGLYMA01G44370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-76myb domain protein 93
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]