PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34158.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 186aa    MW: 20572.9 Da    PI: 6.5149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34158.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-171867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +k +g+Wv+e r+p   g ++r++lg+f t+e+Aa+a++ a++ ++g
  KHN34158.1 18 AYRGVRKRK-WGKWVSETREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 67
                69****999.*******8887...435***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-221776IPR016177DNA-binding domain
CDDcd000182.68E-221777No hitNo description
PfamPF008471.9E-111867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-301876IPR001471AP2/ERF domain
SMARTSM003802.7E-351881IPR001471AP2/ERF domain
PROSITE profilePS5103223.2881875IPR001471AP2/ERF domain
PRINTSPR003673.8E-101930IPR001471AP2/ERF domain
PRINTSPR003673.8E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDMPSSSSSH VVGAASSAYR GVRKRKWGKW VSETREPGTK TRIWLGSFET PEMAAAAYDV  60
AALHFRGRDA RLNFPELAST LPRPVSNNAD HIRMAAHQAA LRLRTNPAAP DTAGSAGSSS  120
SAPLTVRLSP TQIQAINDSP MDSPQTWMQM PDTFMMHDQS MMFASNGYSF EDNEWEHMQN  180
DSLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-151475163ATERF1
3gcc_A6e-151475163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573841.11e-135ethylene-responsive transcription factor ERF021
RefseqXP_028179986.11e-135ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I23e-63ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0B2RPI31e-134A0A0B2RPI3_GLYSO; Ethylene-responsive transcription factor ERF021
STRINGGLYMA01G44140.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-60ERF family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]